Difference between revisions of "NPS Software"

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** cmake --install NPSlib-build/
 
** cmake --install NPSlib-build/
 
** setenv LD_LIBRARY_PATH /home/cdaq/Dirname/nps-2023/hcana-install/lib64:$LD_LIBRARY_PATH
 
** setenv LD_LIBRARY_PATH /home/cdaq/Dirname/nps-2023/hcana-install/lib64:$LD_LIBRARY_PATH
 +
* Setup nps_replay
 
** git clone https://github.com/GithubUserName/nps_replay
 
** git clone https://github.com/GithubUserName/nps_replay
 +
** cd nps_replay
 +
** git remote add --track main upstream https://github.com/JeffersonLab/nps_replay
 +
** mkdir /net/cdaq/cdaql1data/cdaq/"name"/ROOTfiles
 +
** ln -sf /net/cdaq/cdaql1data/cdaq/"name"/ROOTfiles ROOTfiles
 +
** mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT
 +
** mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT/NPS
 +
** mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT/NPS/eel108
 +
** ln -sf /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT
 +
** ln -sf /cache/mss/hallc/c-nps/raw cache
 +
** ln -sf /net/cdaq/cdaql1data/coda/data/raw raw
 +
** If not setup already
 +
*** setenv PATH /home/cdaq/Dirname/hcana-install/bin:$PATH
  
===Starting on the cdaql3 machines (old)===
 
** login into cdaql3 through the gateway
 
** cd  /data1/cdaq/eel108
 
** mkdir "name"  ( make a subdirectory with your "name")
 
** cd "name"
 
** git clone https://github.com/"githubUserName"/hcana
 
** cd hcana
 
** git submodule init
 
** git submodule update
 
** git remote add --track develop upstream https://github.com/JeffersonLab/hcana
 
** source /apps/root/PRO/setroot_CUE.csh
 
** scons
 
===Starting on the ifarm machines===
 
** login into ifarm
 
** cd  /group/nps
 
** mkdir "name"  ( make a subdirectory with your "name")
 
** cd "name"
 
** git clone https://github.com/"githubUserName"/hcana
 
** cd hcana
 
** git submodule init
 
** git submodule update
 
** git remote add --track develop upstream https://github.com/JeffersonLab/hcana
 
** source /apps/root/PRO/setroot_CUE.csh
 
** module load scons
 
** scons -j8
 
* Now you have a working hcana binary.
 
  
== Setting up NPS replay directory instructions ==
 
* Fork a git repo from https://github.com/JeffersonLab/nps_replay
 
===Starting on the cdaql3 machines:===
 
**login into cdaql3 through the gateway
 
** if you have not set up you own subdirectory:
 
***cd /data1/cdaq/eel108
 
***mkdir "name" ( make a subdirectory with your "name")
 
***cd "name"
 
** if you have subdirectory
 
*** cd /data1/cdaq/eel108/"name"
 
** git clone https://github.com/"githubUserName"/nps_replay
 
** cd nps_replay
 
** git remote add --track main upstream https://github.com/JeffersonLab/nps_replay
 
** mkdir /data1/cdaq/eel108/output/ROOTfiles/"name"
 
** ln -sf /data1/cdaq/eel108/output/ROOTfiles/"name" ROOTfiles
 
** mkdir /data1/cdaq/eel108/output/REPORT_OUTPUT/"name"
 
** mkdir /data1/cdaq/eel108/output/REPORT_OUTPUT/"name"/NPS
 
** mkdir /data1/cdaq/eel108/output/REPORT_OUTPUT/"name"/NPS/eel108
 
** ln -sf /data1/cdaq/eel108/output/REPORT_OUTPUT/"name" REPORT_OUTPUT
 
** ln -sf /data1/cdaq/NPS/ cache ( do not have access to cache disk)
 
** ln -sf /data1/cdaq/NPS/ raw
 
** if you are using you own hcana
 
*** ln -sf ../hcana/hcana
 
** if you want to use the standard hcana
 
*** ln -sf /data1/cdaq/eel108/mkjones/hcana
 
 
===Starting on the ifarm machines===
 
===Starting on the ifarm machines===
 
** if you are not in the c-nps group then email jones@jlab.org
 
** if you are not in the c-nps group then email jones@jlab.org

Revision as of 20:10, 15 August 2023

NPS Software Meetings

Setting up HCANA and NPSlib, nps_replay Instructions

Git repos

Starting on the cdaqll machine

  • login into cdaql1 through the gateway
  • if you want to use the standard replay type "go_analysi_nps"
  • if you do not have a directory and want to do independent analysis
  • Create a directory /home/cdaq/Dirname
  • Create a directory /home/cdaq/Dirname/nps-2023
  • cd /home/cdaq/Dirname/nps-2023
  • Setup cmake and ROOT
    • module use /apps/modulefiles/
    • module load cmake
    • source /apps/root/PRO/bin/thisroot.csh
  • Setup hcana
  • Setup NPSlib
    • git clone https://github.com/GithubUserName/NPSlib
    • cmake -B NPSlib-build -S NPSlib -DCMAKE_INSTALL_PREFIX=hcana-install
    • cmake --build NPSlib-build/
    • cmake --install NPSlib-build/
    • setenv LD_LIBRARY_PATH /home/cdaq/Dirname/nps-2023/hcana-install/lib64:$LD_LIBRARY_PATH
  • Setup nps_replay
    • git clone https://github.com/GithubUserName/nps_replay
    • cd nps_replay
    • git remote add --track main upstream https://github.com/JeffersonLab/nps_replay
    • mkdir /net/cdaq/cdaql1data/cdaq/"name"/ROOTfiles
    • ln -sf /net/cdaq/cdaql1data/cdaq/"name"/ROOTfiles ROOTfiles
    • mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT
    • mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT/NPS
    • mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT/NPS/eel108
    • ln -sf /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT
    • ln -sf /cache/mss/hallc/c-nps/raw cache
    • ln -sf /net/cdaq/cdaql1data/coda/data/raw raw
    • If not setup already
      • setenv PATH /home/cdaq/Dirname/hcana-install/bin:$PATH


Starting on the ifarm machines

    • if you are not in the c-nps group then email jones@jlab.org
      • to see what groups you are in type:"groups" when on the CUE machines.
    • if you have not set up you own subdirectory:
      • cd /group/nps
      • mkdir "name" ( make a subdirectory with your "name")
      • cd "name"
    • if you have subdirectory
      • cd /group/nps/"name"
    • git clone https://github.com/"githubUserName"/nps_replay
    • cd nps_replay
    • git remote add --track main upstream https://github.com/JeffersonLab/nps_replay
    • mkdir /volatile/hallc/nps/"name"
    • mkdir /volatile/hallc/nps/"name"/ROOTfiles
    • ln -sf /volatile/hallc/nps/"name"/ROOTfiles ROOTfiles
    • mkdir /volatile/hallc/nps/"name"/REPORT_OUTPUT
    • mkdir /volatile/hallc/nps/"name"/REPORT_OUTPUT/NPS
    • mkdir /volatile/hallc/nps/"name"/REPORT_OUTPUT/NPS/eel108
    • ln -sf /volatile/hallc/nps/"name"/REPORT_OUTPUT REPORT_OUTPUT
    • ln -sf /cache/mss/hallc/c-nps/raw raw
    • if using your own hcana binary
      • ln -sf ../hcana/hcana

Analyzing data

  • on cdaql3
    • cd /data1/cdaq/eel108/"name"/nps_replay
  • On ifarm
    • cd /group/nps/"name"/nps_replay
  • ./hcana
  • At the analyzer prompt
    • .x SCRIPTS/NPS/eel108_replay.C(nrun,nevents)
    • If events = -1 , then replay all events.
    • It is slow because we are reading sample data for all FADc channels for each event
  • Root file is output to the ROOTfiles directory.

Analysis info

Run spreadsheet EEL108

Git workflow

  • Slides on Git with the suggested workflow'

Miscellaneous Support Repos

Please post supporting scripts, online displays, debugging code, etc below.  (Github repo links please!)