Difference between revisions of "NPS Software"

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Line 30: Line 30:
 
** cmake --install hcana-build/
 
** cmake --install hcana-build/
 
** setenv PATH /home/cdaq/Dirname/nps-2023/hcana-install/bin:$PATH
 
** setenv PATH /home/cdaq/Dirname/nps-2023/hcana-install/bin:$PATH
 +
** If one needs to recompile after making changes in hcana/src
 +
*** cd  hcana-build
 +
*** make install
 
* Setup NPSlib
 
* Setup NPSlib
 
** git clone https://github.com/GithubUserName/NPSlib
 
** git clone https://github.com/GithubUserName/NPSlib
Line 38: Line 41:
 
** cmake --build NPSlib-build/
 
** cmake --build NPSlib-build/
 
** cmake --install NPSlib-build/
 
** cmake --install NPSlib-build/
 +
** If one needs to recompile after making changes in NPSlib/src
 +
*** cd  NPSlib-build
 +
*** make install
 
** setenv LD_LIBRARY_PATH /home/cdaq/Dirname/nps-2023/hcana-install/lib64:$LD_LIBRARY_PATH
 
** setenv LD_LIBRARY_PATH /home/cdaq/Dirname/nps-2023/hcana-install/lib64:$LD_LIBRARY_PATH
 
* Setup nps_replay
 
* Setup nps_replay
Line 59: Line 65:
  
 
===Starting on the ifarm machines===
 
===Starting on the ifarm machines===
−
** if you are not in the c-nps group then email jones@jlab.org
+
* if you are not in the c-nps group then email jones@jlab.org
−
*** to see what groups you are in type:"groups" when on the CUE machines.
+
** to see what groups you are in type:"groups" when on the CUE machines.
−
** if you have not set up you own subdirectory:
+
* if you have not set up you own subdirectory:
−
***cd /group/nps
+
**cd /group/nps
−
***mkdir "name" ( make a subdirectory with your "name")
+
**mkdir "name" ( make a subdirectory with your "name")
−
***cd "name"
+
**cd "name"
−
** if you have subdirectory
+
* if you have subdirectory
−
*** cd /group/nps/"name"
+
** cd /group/nps/"name"
−
** git clone https://github.com/"githubUserName"/nps_replay
+
* Following above directions for the cdaq machines to install hcana,NPSlib and nps_replay
−
** cd nps_replay
+
* When setting up the nps_replay use volatile disk instead of /net/cdaq/cdaql1data/cdaq
−
** git remote add --track main upstream https://github.com/JeffersonLab/nps_replay
 
 
** mkdir /volatile/hallc/nps/"name"
 
** mkdir /volatile/hallc/nps/"name"
 
** mkdir /volatile/hallc/nps/"name"/ROOTfiles
 
** mkdir /volatile/hallc/nps/"name"/ROOTfiles
Line 81: Line 86:
  
 
== Analyzing data ==
 
== Analyzing data ==
−
*on cdaql3
+
*on cdaql1
−
** cd /data1/cdaq/eel108/"name"/nps_replay
+
** cd //"name"/nps_replay
 
* On ifarm
 
* On ifarm
−
** cd /group/nps/"name"/nps_replay
+
** cd /group/nps/"name"/nps-2023/nps_replay
−
* ./hcana
+
* hcana
 
* At the analyzer prompt
 
* At the analyzer prompt
 
**  .x SCRIPTS/NPS/eel108_replay.C(nrun,nevents)
 
**  .x SCRIPTS/NPS/eel108_replay.C(nrun,nevents)

Revision as of 19:31, 15 August 2023

NPS Software Meetings

Setting up HCANA and NPSlib, nps_replay Instructions

Git repos

Starting on the cdaqll machine

  • login into cdaql1 through the gateway
  • if you want to use the standard replay type "go_analysi_nps"
  • if you do not have a directory and want to do independent analysis
  • Create a directory /home/cdaq/Dirname
  • Create a directory /home/cdaq/Dirname/nps-2023
  • cd /home/cdaq/Dirname/nps-2023
  • Setup cmake and ROOT
    • module use /apps/modulefiles/
    • module load cmake
    • source /apps/root/PRO/bin/thisroot.csh
  • Setup hcana
    • git clone https://github.com/GithubUserName/hcana
    • cd hcana
    • git remote add --track develop upstream https://github.com/JeffersonLab/hcana
    • git submodule init
    • git submodule update
    • cd ..
    • cmake -B hcana-build -S hcana -DCMAKE_INSTALL_PREFIX=hcana-install
    • cmake --build hcana-build -j12
    • cmake --install hcana-build/
    • setenv PATH /home/cdaq/Dirname/nps-2023/hcana-install/bin:$PATH
    • If one needs to recompile after making changes in hcana/src
      • cd hcana-build
      • make install
  • Setup NPSlib
    • git clone https://github.com/GithubUserName/NPSlib
    • cd NPSlib
    • git remote add --track main upstream https://github.com/JeffersonLab/NPSlib
    • cd ..
    • cmake -B NPSlib-build -S NPSlib -DCMAKE_INSTALL_PREFIX=hcana-install
    • cmake --build NPSlib-build/
    • cmake --install NPSlib-build/
    • If one needs to recompile after making changes in NPSlib/src
      • cd NPSlib-build
      • make install
    • setenv LD_LIBRARY_PATH /home/cdaq/Dirname/nps-2023/hcana-install/lib64:$LD_LIBRARY_PATH
  • Setup nps_replay
    • git clone https://github.com/GithubUserName/nps_replay
    • cd nps_replay
    • git remote add --track main upstream https://github.com/JeffersonLab/nps_replay
    • mkdir /net/cdaq/cdaql1data/cdaq/"name"/ROOTfiles
    • ln -sf /net/cdaq/cdaql1data/cdaq/"name"/ROOTfiles ROOTfiles
    • mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT
    • mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT/NPS
    • mkdir /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT/NPS/eel108
    • ln -sf /net/cdaq/cdaql1data/cdaq/"name"/REPORT_OUTPUT
    • ln -sf /cache/mss/hallc/c-nps/raw cache
    • ln -sf /net/cdaq/cdaql1data/coda/data/raw raw
    • If not setup already and will have to done for every new login
      • setenv PATH /home/cdaq/Dirname/nps-2023/hcana-install/bin:$PATH
      • setenv LD_LIBRARY_PATH /home/cdaq/Dirname/nps-2023/hcana-install/lib64:$LD_LIBRARY_PATH
      • source /apps/root/PRO/bin/thisroot.csh
    • Replay scripts are under the SCRIPTS


Starting on the ifarm machines

  • if you are not in the c-nps group then email jones@jlab.org
    • to see what groups you are in type:"groups" when on the CUE machines.
  • if you have not set up you own subdirectory:
    • cd /group/nps
    • mkdir "name" ( make a subdirectory with your "name")
    • cd "name"
  • if you have subdirectory
    • cd /group/nps/"name"
  • Following above directions for the cdaq machines to install hcana,NPSlib and nps_replay
  • When setting up the nps_replay use volatile disk instead of /net/cdaq/cdaql1data/cdaq
    • mkdir /volatile/hallc/nps/"name"
    • mkdir /volatile/hallc/nps/"name"/ROOTfiles
    • ln -sf /volatile/hallc/nps/"name"/ROOTfiles ROOTfiles
    • mkdir /volatile/hallc/nps/"name"/REPORT_OUTPUT
    • mkdir /volatile/hallc/nps/"name"/REPORT_OUTPUT/NPS
    • mkdir /volatile/hallc/nps/"name"/REPORT_OUTPUT/NPS/eel108
    • ln -sf /volatile/hallc/nps/"name"/REPORT_OUTPUT REPORT_OUTPUT
    • ln -sf /cache/mss/hallc/c-nps/raw raw


Analyzing data

  • on cdaql1
    • cd //"name"/nps_replay
  • On ifarm
    • cd /group/nps/"name"/nps-2023/nps_replay
  • hcana
  • At the analyzer prompt
    • .x SCRIPTS/NPS/eel108_replay.C(nrun,nevents)
    • If events = -1 , then replay all events.
    • It is slow because we are reading sample data for all FADc channels for each event
  • Root file is output to the ROOTfiles directory.

Analysis info

Run spreadsheet EEL108

Git workflow

  • Slides on Git with the suggested workflow'

Miscellaneous Support Repos

Please post supporting scripts, online displays, debugging code, etc below.  (Github repo links please!)
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