Deploy ERSAP data pipelines on EJFAT nodes via JIRIAF

Deploy ERSAP Data Pipelines Workflows on EJFAT Nodes

This guide explains how to use the Helm charts in the main/local-ejfat/job folder to deploy ERSAP data pipeline workflows on EJFAT nodes.

Prerequisites

• Helm 3 installed
• Kubernetes cluster access
• kubectl configured

Chart Structure

The main chart is located in the job/ directory. Key files include:

• Chart.yaml: Metadata for the chart
• values.yaml: Default configuration values
• Templates in the templates/ directory

Step-by-Step Usage

This diagram provides a visual representation of the steps involved in setting up and deploying ERSAP workflows using the Helm charts in this repository.

1. Setup Environment

• Ensure you have Helm 3 installed, access to a Kubernetes cluster, and kubectl configured.
• Clone the repository and navigate to the local-ejfat folder:

git clone https://github.com/JeffersonLab/jiriaf-test-platform.git
cd jiriaf-test-platform/main/local-ejfat

2. Set Project ID

• Export your project ID as an environment variable:

export ID=your-project-id # e.g. jlab-100g-nersc-ornl

3. Customize Deployment (Optional)

• Edit job/values.yaml to customize your deployment. Key settings include:

Deployment:
  name: this-name-is-changing
  namespace: default
  replicas: 1
  serviceMonitorLabel: ersap-test4
  cpuUsage: "128"
  ejfatNode: "2"
ersapSettings:
  image: gurjyan/ersap:v0.1
  cmd: /ersap/run-pipeline.sh
  file: /x.ersap

• For more advanced customization, consider modifying the template files in the job/templates/ directory:
  • job-job.yaml: Customize the Kubernetes Job specification
  • job-configmap.yaml: Adjust the scripts for job containers
  • job-service.yaml: Modify the Kubernetes Service configuration
  • prom-servicemonitor.yaml: Fine-tune Prometheus monitoring settings

4. Deploy Prometheus (If not already running)

• Refer to Deploy Prometheus Monitoring with Prometheus Operator or main/prom/readme.md for instructions on how to install and configure Prometheus.
• Check if the prometheus instance is running:

helm ls | grep "$ID-prom"

If the command returns no results, it means there's no Prometheus instance for your project ID.

• Install a Prometheus instance for your project if it's not already running:

cd main/prom
helm install $ID-prom prom/ --set Deployment.name=$ID

5. Deploy EJFAT Workflow

• Use the launch_job.sh script to deploy the EJFAT workflow:

cd main/local-ejfat
ID=jlab-100g-nersc-ornl
INDEX=2
./launch_job.sh $ID $INDEX

• The script uses the following variables:
  • ID: The project identifier (e.g., jlab-100g-nersc-ornl)
  • INDEX: A unique index for the job (e.g., 2)

6. Monitor Deployment

• Check Helm release: helm ls | grep $ID-job-ejfat-$INDEX
• Check pod status: kubectl get pods
• Describe a pod: kubectl describe pod <pod-name>

7. Manage Deployed Jobs and Clean Up Workflows

• List deployed jobs: helm ls
• Delete a deployed job:

helm uninstall $ID-job-ejfat-<INDEX>

• After uninstalling the Helm release, manually delete containers on EJFAT nodes:
  1. Log in to each EJFAT node used in your deployment.
  2. List all containers: docker ps -a
  3. Identify containers related to your job.
  4. Remove these containers: docker rm -f <container-id>